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Exploratory spatial data analysis for the identification of risk factors to birth defects

  • Jilei Wu1, 2,
  • Jinfeng Wang1,
  • Bin Meng1,
  • Gong Chen2,
  • Lihua Pang2,
  • Xinming Song2,
  • Keli Zhang3,
  • Ting Zhang4 and
  • Xiaoying Zheng2Email author
BMC Public Health20044:23

DOI: 10.1186/1471-2458-4-23

Received: 09 October 2003

Accepted: 18 June 2004

Published: 18 June 2004



Birth defects, which are the major cause of infant mortality and a leading cause of disability, refer to "Any anomaly, functional or structural, that presents in infancy or later in life and is caused by events preceding birth, whether inherited, or acquired (ICBDMS)". However, the risk factors associated with heredity and/or environment are very difficult to filter out accurately. This study selected an area with the highest ratio of neural-tube birth defect (NTBD) occurrences worldwide to identify the scale of environmental risk factors for birth defects using exploratory spatial data analysis methods.


By birth defect registers based on hospital records and investigation in villages, the number of birth defects cases within a four-year period was acquired and classified by organ system. The neural-tube birth defect ratio was calculated according to the number of births planned for each village in the study area, as the family planning policy is strictly adhered to in China. The Bayesian modeling method was used to estimate the ratio in order to remove the dependence of variance caused by different populations in each village. A recently developed statistical spatial method for detecting hotspots, Getis's
[7], was used to detect the high-risk regions for neural-tube birth defects in the study area.


After the Bayesian modeling method was used to calculate the ratio of neural-tube birth defects occurrences, Getis's
statistics method was used in different distance scales. Two typical clustering phenomena were present in the study area. One was related to socioeconomic activities, and the other was related to soil type distributions.


The fact that there were two typical hotspot clustering phenomena provides evidence that the risk for neural-tube birth defect exists on two different scales (a socioeconomic scale at 6.84 km and a soil type scale at 22.8 km) for the area studied. Although our study has limited spatial exploratory data for the analysis of the neural-tube birth defect occurrence ratio and for finding clues to risk factors, this result provides effective clues for further physical, chemical and even more molecular laboratory testing according to these two spatial scales.


Birth defects, formally defined by the March of Dimes Birth Defects Foundation, refer to "any anomaly, functional or structural, that presents in infancy or later in life and is caused by events preceding birth, whether inherited, or acquired". Varying from minor cosmetic irregularities to life threatening disorders, birth defects are the major cause of infant mortality and a leading cause of disability. However, they can be prevented and early intervention is important to ameliorate their consequences [1]. But this requires an accurate understanding of the causes and risk factors in advance.

According to results of birth defects research, the probability of birth defects caused by genetic factors may be similar in various regions. However, environmental risk factors, such as chemicals, toxins, and environmental pollution account for different ratios of birth defect occurrences in different regions. Those environmental risk factors, including socioeconomic status and geographical elements, often have spatial associations as well as various patterns.

As long as diseases have been recognized, it has been apparent that many of them are manifested in clusters. Interest in those clusters resides not so much in the mere aggregation of cases but rather in populations that have a high rate of disease. Experience in epidemiology should remind us that clustering can also be observed for variables that are not causes but serve as markers for the causes. The scientific reason to study disease clusters is to learn about clustering of the causes [2] (Rothman, 1990). Exploratory spatial data analysis methods, which aim at testing hypotheses of spatially distributed object analysis, can serve as a tool in identifying risk factors for birth defects.

Based on research, the ratio of birth defect occurrences is estimated to be about 40–50‰ in P. R. China. Shanxi province, a northern region in China, has the highest ratio of neural-tube birth defects in the world. In order to reach prepotency, we selected Heshun, one county of Shanxi, as an experimental region for study (Figure 1). This county lies in the Taihang Mountain region and forms a relatively closed area. Most of the people in this county are farmers and seldom change their living environment. Furthermore, there have been no large-scale movements of people in the history of this region. The inherited and congenital causes of birth defects are similar among the people in this region, and those causes explain only a small fraction of all neural-tube birth defects cases. Following the CDC's guidelines [3] for investigating clusters of health events, exploratory spatial data analysis methods were introduced to study the relationship between environmental risk factors and neural-tube birth defects.
Figure 1

Location of the study area


Spatial position and expression

There were 322 villages and one town in the study area. Since the main object of this study was the relationship between environmental risk factors and neural-tube birth defects, the town was not included, as the environmental factors there are somewhat complex. And birth defects registers in the town were removed from the study as well. The locations of the 322 villages were determined by the Geographical Information Systems for spatial analysis. As there were no boundaries defined for the villages, we drew them for each village using a Voronoi chart (Figure 2).
Figure 2

a) Villages in study region, b) Voronoi polygons

Bayesian modeling of neural-tube birth defects data

As one of the areas with the highest ratio of neural-tube birth defects, inspection branches were well organized in this county. Records of birth defect cases for four years (1998~2001) were acquired based on hospital registers and investigation in villages. These cases were divided into neural-tube birth defects and other birth defects by organ system. Neural-tube birth defects include anencephaly, spina bifida, encephalocele, holoprosencephaly and hydrecephalus, among others. Different birth defects may be caused by different risk factors, and we limited our research to neural-tube birth defects.

However, there are seldom full records for normal births. For the total number of birth records, we used the number of births planned every year for each village. As the family planning policy has been strictly carried out, this number reflects the real births in maximum. Furthermore, because birth defects are low probability events, four years' neural-tube birth defects cases were added together and considered as one year's cases for the calculation of the occurrence ratio.

When the occurrence ratio was calculated, the number of births in each village was different because of population differences, which would cause a bias in the ratio acquired by simply dividing the number of birth defects by the number of all births. Generally, villages with smaller populations, which correspondingly have fewer births, will have larger variances for calculating the ratio of birth defects occurrence. Simply dividing the number of birth defects by the number of all births may cause an error in our spatial analysis. [4]

In order to remove the dependence of the sampling variance on population size and calculate the neural-tube birth defects ratio, Bayesian modeling methods were used through WinBUGS software. The observed number of cases in each village was treated as a binomial random variable with parameter P i in our analysis. P i is the probability of a live birth in village i having a birth defect. The standard rate (observed birth defects cases divided by all births) is the maximum likelihood estimate of P i . As the environmental and socioeconomic status are similar, the P i is assumed to be constant within the same village. And the parameter P i is modeled through a logit transformation log it(P i ), expressed as:

log it(P i ) = log[P i /(1.0 - P i )] = μ + ν i + ε i

where μ (beta0 in WinBUGS) is the intercept term (mean), which we used for the neural-tube birth defect ratio, ν i is spatially structured auto-regression, and spatially unstructured ε i is the random effects. The Bayesian adjusted rate was generated by WinBUGS under the binomial-logistic modeling assumption. (See WinBUGS code and sample results in Appendixes I & II) [5]. The μ (beta0) has a uniform prior and the ν i and ε i with a gamma prior. The car.normal in WinBUGS was chosen to specify the intrinsic Gaussian CAR prior distribution of ν i . Figure 3c shows the population distribution and the ratios of neural-tube birth defects cases, which is the maximum likelihood estimate of P i and figure 3d shows the adjusted ratios.
Figure 3

a) Neural-tube birth defect cases, b) Population of Heshun, c) Calculated NTBD occurrence ratio, d) Bayesian adjusted NTBD occurrence ratio

Spatial statistics methods

statistics, developed by Getis and Ord (1992), is a multiplicative measurement of the overall spatial association of values which fall within a critical distance of each other. It can be used as a method of detecting hotspots, and can be expressed as follows [6, 7]:

Here, S is the standard variance of the birth defects occurrence ratio, When the distance from village j to i is within distance d, then w ij (d) = 1; otherwise w ij (d) = 0, and , . The higher the value of is, the greater the influence of village i is at a given distance d, indicating that village i is a hotspot of the region.


Distance scale

As Getis's
statistics require a critical distance value as a threshold, typical distances in this region were calculated and described as shown in table 1.
Table 1

Typical distance scales and their meanings

Statistical items

Distance scale


Nearest distance among remote villages

6.2 – 9.3 km

Socio-economic activities scopes

Differentiated distance of soil types

19.5 – 30 km

Geological variance distance

Hotspots detect

Figure 4 shows two typical hotspot distributions of NTBD occurrence ratios calculated by Getis's statistics.
Figure 4

Getis's G* statistics a) Hotspots detected by Getis's G* statistics at 6.84 km (Grouped distribution), b) Z scale test of Gi* (at 6.84 km), c) Hotspots detected by Getis's G* statistics at 22.8 km (Grouped distribution), d) Z scale test of Gi* (at 22.8 km)


Birth defects are becoming a major cause of rising infant mortality. It has been found that birth defects account for a gradual increase in infant mortality from one fourth to one third of all births in the 1990's. In order to prevent birth defects or enable early intervention, risk factors have been assessed in laboratories using many analytical methods [8]. However, as people live in different kinds of environments and have different socioeconomic statuses, no laboratory environment can fully simulate the conditions associated with risk factors. So the analytical results determined in laboratories can only explain a small fraction of the risk factors for birth defects.

Socioeconomic status is the most obvious potential obstacle in any spatial analysis of health outcomes. There has been little research on the strength of the relation between socioeconomic status and the risk of congenital anomaly (birth defects) (H. Dolk, 1998) [9]. Our work suggests that there is a typical grouped distribution of hotspots when distance scopes based on residents' common socio-economic activities are taken as a critical distance value. We therefore think that socioeconomic status may affect the scope of risk factors. For example, the scope of intermarriage usually falls within the definition of social activities distance, and the male and female usually have similar socioeconomic status when they get married. This may indicate that they have been exposed to some common risk factors, which would accelerate the occurrence of birth defects.

Another possible obstacle to assessing risk factors for birth defects is the presence of toxins in the environment. Birth defects are heterogeneous in pathogenesis and aetiology. We selected neural-tube birth defects as the main object, and the study area has a zonal distribution of soil types [10] (Figure 5). According to general knowledge of local residents, areas with high occurrences of birth defects are usually diggings areas. So we took the soil variance distance scale as the critical distance value in Getis's statistics, and found a similar zonal distribution of birth defects hotspots.
Figure 5

Soil types distribution (zonal type) Data source: Chinese Map Press. 1978

The phenomena of hotspot distribution at this distance scale could be used as a basis to inform further study, as soil variance can reflect the changes of lithology, and the minerals or rocks may have some specific chemicals or chemical mixtures. According to the dualism of the balance between the environment and human beings, the contents of a human being's blood are consistent with chemical elements in the lithosphere. If this balance is broken, diseases will break out. [8, 11] The contents of the chemical elements of the lithosphere, human blood and soil samples from Shanxi province are shown below (Figure 6), in which we can see differences in the distribution of chemical elements. The elements in the three main soil types of Heshun County were tested and compared to the base values for the whole province (Table 2). The main difference in the three soil types is the metal content. Leached cinnamon soil and cinnamon soil have high contents of metals which may have an influence on human health, and brown soil has average contents of those metals. Analysis of the nutrient contents of these three soil types, [12] indicates that with high/low contents of organic matter and high/low pH values, these health-related metals have different statuses. In soil with high organic matter content and pH value, metals usually form complexes and thus cannot easily be absorbed by crops. This finally affects the diet of local residents. In soil with low organic matter content and pH value, metals are easily lost with soil erosion, Only small amounts of these metals are absorbed by plants and do harm and so there is less danger to local residents. Soil with average organic matter and pH value, such as leached cinnamon soil, may contain a higher risk factor for neural-tube birth defects (Table 3). However, these conclusions would need further analysis to determine environmental potential hazard. And direct measurement of soil chemicals and residents' exposure to them would help to assess the risk factors.
Figure 6

Contents of twenty chemical elements in the worldwide lithosphere, human blood and soil samples from Shanxi province * Na, K, Ca, Mg, Fe were calculated for the mathematical average value for different contents of all soil types (%), and others were calculated for geometrical the average value for different soil type distribution areas (mg/kg). (Data source: Xiaolan AN, 1995; Chongwen SHI et al. 1996)

Table 2

Difference in chemical element contents of three main soil types in Heshun

Soil types

High content

Average content

low content

leached cinnamon soil

Co Pb Cu Ni Cr Zn Mn

As F Hg


cinnamon soil

Pb Ni Cr Zn Mn Hg Cd

As Co F Cu


brown soil

As F Hg Cd

Co Pb Ni Cr Zn Mn


* High content elements refers to the contents 10% above average and low contents refers to contest 10% below the average in Shanxi province. (Data source: Chongwen SHI et al. 1996)

Table 3

Nutrient of the three soil types

Soil types


Organic (%)

Available Nitrogen(mg/kg)

leached cinnamon soil




cinnamon soil




brown soil




(Data source: Lingrao MENG, 2002)

For the data used in this study, birth defects may not have been fully reported in this area as some pregnant women chose home births rather than hospital births. So we used data from hospital records and investigations in villages. Some women may have relocated their place of residence during their pregnancy, so there could be a migration bias in risk factor identification. However, as chemicals accumulate in the body over time and there have been no large scale movements of people in this region, we think there is little migration bias for the selected study area. [13] As birth defects are low-probability events and the family planning policy was carried out strictly, we added four years of birth defects cases together to calculate the occurrence ratio. Though this may magnify the occurrence ratio, little bias would be introduced for long-existing environmental risk factors for birth defects in the spatial dimension.


This study analyzed the spatial distribution of neural-tube birth defects by exploratory spatial data analysis methods. The results showed that two typical clustering phenomena were present for two scales. These two critical distances in Getis's
statistics have some relationship to socio-economic and geological environments. These give effective clues to detect the environmental risk factors for neural-tube birth defects. This exploratory spatial data analysis has proven the efficiency of using the proposed method to seek clues to environmental factors that increase the risk of birth defects. The next step of this study should be to analyze geological samples by chemical testing in the laboratory to identify environmental risk factors. Following this, animal models for exposure risk should be established and re-tested. Meanwhile, socio-economic activities such as the scope of inter-marriage should be investigated as well.



This study was supported by grants 2001CB5103 from the National "973" Program, 30025042, JJ03000101 and 49871064 from the National Nature Science Foundation of China, 2002AA135230 from the National High Technology Research and Development Program and the Science Innovation Project of the Chinese Academy of Sciences and the "211" program of Peking University.

Authors’ Affiliations

Institute of Geographical Sciences and Nature Resources Research, CAS
Institute of Population Research, Peking University
Department of Resources and Environment, Peking Normal University
Capital Institute of Pediatrics


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