Completeness of hepatitis, brucellosis, syphilis, measles and HIV/AIDS surveillance in Izmir, Turkey
© Durusoy and Karababa. 2010
Received: 29 June 2009
Accepted: 17 February 2010
Published: 17 February 2010
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© Durusoy and Karababa. 2010
Received: 29 June 2009
Accepted: 17 February 2010
Published: 17 February 2010
According to the surveillance system in Turkey, most diseases are notified only by clinicians, without involving laboratory notification. It is assumed that a considerable inadequacy in notifications exists; however, this has not been quantified by any researcher. Our aim was to evaluate the completeness of communicable disease surveillance in the province of Izmir, Turkey for the year of 2003 by means of estimating the incidences of diseases.
Data on positive laboratory results for the notifiable and serologically detectable diseases hepatitis A, B, C, brucellosis, syphilis, measles and HIV detected in 2003 in Izmir (population 3.5 million) were collected from serology laboratories according to WHO surveillance standards and compared to the notifications received by the Provincial Health Directorate. Data were checked for duplicates and matched. Incidences were estimated with the capture-recapture method. Sensitivities of both notifications and laboratory data were calculated according to these estimates.
Among laboratories performing serologic tests (n = 158) in Izmir, 84.2% accepted to participate, from which 23,515 positive results were collected. Following the elimination of duplicate results as well as of cases residing outside of Izmir, the total number was 11,402. The total number of notifications was 1802. Notification rates of cases found in laboratories were 31.6% for hepatitis A, 12.1% for acute hepatitis B, 31.8% for brucellosis, 25.9% for syphilis and 100% for HIV confirmation.
It was discovered that for hepatitis A, B, C, brucellosis and syphilis, there is a considerable under-notification by clinicians and that laboratory data has the potential of contributing greatly to their surveillance. The inclusion of laboratories in the surveillance system of these diseases could help to achieve completeness of reporting.
Laboratory notification has become an integral part in the surveillance system of many countries as a result of advances in laboratory diagnosis. According to the communicable disease surveillance system in Turkey, most diseases are expected to be notified only by clinicians, without involving laboratory notification. This route leads to significant under-estimation of disease burden. According to a study carried out on hepatitis A cases in a paediatric state hospital in Izmir in 1999, only 30.2% of the 351 cases with a positive IgM antiHAV laboratory result were reported . Although these data existed in the laboratory of the hospital, they were not sent to the local health authority as there was no such chain of notification defined and as there is a considerable underreporting by clinicians.
To assess completeness of surveillance of some notifiable diseases by combining laboratory data and notifications.
To quantify under-notification using capture-recapture.
To evaluate the contribution of laboratory data to notifications in order to give recommendations on how laboratory data can best improve the surveillance system in Turkey.
Serological parameters used in the study for data collection
WHO serological criteria 
Additional criteria and relevance
IgM anti-HAV positive (acute)
HBsAg positive (unspecified) or IgM anti-HBc positive (acute)
Total anti-HBc positive when IgM Anti-HBc not tested
anti-HCV positive (acute and unspecified combined)
HCV-RNA positive, showing also infectivity
Brucella agglutination titre (e.g., standard tube agglutination > 160) or ELISA (IgA, IgG, IgM), 2-ME (confirmed)
Rose-Bengal test, due to its use as a screening test (probable)
RPR or VDRL confirmed by TPHA or FTA
Specific IgM antibodies
HIV positive serology (ELISA), confirmation
All the province of Izmir (nine urban and 19 rural districts) with its 3.5 million inhabitants was covered in this research since inhabitants of a district could be diagnosed in other districts with more numerous and sophisticated medical facilities. The city of Izmir, administrative centre of the province, is the third largest metropolitan area of Turkey and with two university hospitals and six other public tertiary care hospitals, there would be little chance for cases to be diagnosed elsewhere. By procedure, notifications from all districts are sent to Izmir Provincial Health Directorate, enabling comparison at a provincial level.
In order to contact all serology laboratories in the province, the list of public and private facilities providing laboratory services was obtained from the provincial health directorate. All these facilities were visited (n = 190) in search for laboratories using serological diagnostic procedures. Facilities not applying serology (n = 21) and facilities which were no longer in operation (n = 11) were excluded. Facilities measuring at least one of the serological parameters stated in Table 1 were the target group of the study (n = 158).
Locations, type and acceptance status of facilities performing serological tests in Izmir province
% among total
Total in the urban area
Blood donation centrea
Total out of the urban area
Blood donation centre
Data concerning cases having positive serology results in 2003 were collected from participating laboratories. Most of these data were actively collected on consecutive visits: Cases were found by scanning records, usually on paper/laboratory notebooks and information about their identities was traced among administrative records, usually in a computer system. In some laboratories where results were not retained and there were few cases identified, we left case report forms for the laboratory to complete. Facilities were also asked to send electronic notifications to the researcher. Some laboratories accepted and sent results electronically. But these facilities were also visited for data collection, as some of them did not send electronic notifications although they had agreed to.
Laboratory results and notifications were entered into the same database. The database included one row for each laboratory test day for cases found positive. Data were matched based on full name, and for similar names additional data including date of birth, sex, father's name, address, phone number, date of testing and diagnosis were used to match cases. Duplicates in multiple laboratories were classified according to the laboratory which first diagnosed them. For HIV/AIDS, both data sources did not include names but were coded with a standard process relying on surname, name, father's name and birth year. Cases were compared according to these standard codes and only a 100% match on the code was used to link records.
As notifications to Izmir Provincial Health Directorate consisted only of cases residing in Izmir, laboratory - diagnosed cases not residing in Izmir also needed to be removed from the analysis. To do this, cases with missing addresses were classified as cases from Izmir if they were found positive out of the urban area or in secondary care institutions inside the metropolitan area (6.5% of cases), since cases with a referral sent from other provinces to Izmir are cared for in tertiary care institutions. Cases with a missing address in tertiary care (25.1% of cases) were assigned randomly as Izmir or non-Izmir cases, proportionate to the number of non-Izmir cases found in each institution among cases with known addresses. Laboratory diagnosis rates and reported rates were calculated using numbers of cases found in each source and 2003 mid-year population of Izmir province.
Capture-recapture is a method used to estimate the number of individuals in a population using population-based data from two or more independent, but overlapping sources . Its name deriving from its first usage by zoologists, it has been used in human populations since 1949 [5, 6]. In recent years, it has been used by epidemiologists to estimate prevalence or incidence of several diseases, to evaluate completeness of different notifications and to estimate coverage of cancer registries [4, 7–11]. The underlying reason for its usage is the insufficiency of disease surveillance systems in covering all cases and its appropriateness, as a method, in correcting this insufficiency [12, 13].
Incidence rates were calculated using Izmir's mid-year population in 2003. Incidences and sensitivity of notifications were estimated with capture-recapture method using two data sources: cases found positive in laboratories and cases notified. Estimates were calculated with Chapman's formula developed for two-list capture-recapture  and Chao's lower bound estimator using frequency data adapted for a two-source capture-recapture . Both formulas are given below.
Where L 1 is the number of cases in the first source (laboratory), L 2 is the number of those present in the second source (notifications), and d is the number of cases present on both lists.
Where f 1 is the frequency of those identified by exactly one source (equal to [L 1+L 2-2d] in Chapman's formula), and f 2 the frequency of identifications by exactly two sources (equal to [d]).
A written permission was received from the Ministry of Health. Ethical committee approval was obtained from a local tertiary care hospital providing graduate medical education.
The anonymity and security of identities of cases was of major importance in this study. The confidentiality of data was guaranteed to participating facilities and to TÜBİTAK; the institution granting this research. Data were collected by only one researcher who entered and stored it in a password-protected database.
Among laboratories performing serological tests, 93.5% public (n = 46) and 80.4% private (n = 112) facilities accepted to participate in the study (Table 2).
Data were collected thoroughly from 77.4% (n = 103) of the participating institutions for the year 2003. In 5.3% of the facilities (n = 7), data could not be obtained due to the lack of record-keeping. In 7.5% (n = 10) data on some months were missing, in 6.8% (n = 9) data for some months could not be accessed due to unsolvable technical problems, and in 3.0% (n = 4) the laboratories were closed in the year 2003 so data were available only for the months they were open.
Internet connection was available in 42.1% (n = 56) of participating facilities, among which 44.6% (n = 25) accepted to send electronic notifications to the researcher. Only four facilities sent electronic notifications. Another facility sent the addresses of cases electronically. No positive case was found in four of the 20 facilities which did not send electronic notifications.
In total, 628 visits were made to participating facilities and data concerning 19,458 positive results were collected. With the addition of 4057 (17.3%) positive results sent electronically, the total number of positive results collected during this study amounted to 23,515. Among positive results, 93.2% were diagnosed in public versus 6.8% in private institutions and 89.2% were diagnosed in hospitals, 7.1% in laboratories and 3.7% in blood donation centres. Among all positive results, 80.4% were diagnosed in only 11 public institutions (8.6% of facilities) of which 68.4% consisted of positive results for hepatitis B. In 20.9% (n = 27) of the facilities, no positive result was found and all of these were private laboratories.
Numbers of cases of each disease and notification rates in Izmir, 2003 (N = 3,506,672)
No. of records in the data sources
Rates according to data sources
to Health Directorate (b)
Proportion of lab diagnoses notified % (c/a)
Lab diagnosis rate (a/N)
Hepatitis C total
Dialysis & gastroenterology cases omitted
Agglutination ≤ 1/80
notified lab cases not meeting WHO criteria included
Confirmation or RNA positive
Confirmation or RNA positive, previous years' notifications included
Capture-recapture estimates of total numbers of cases, sensitivities of each source, incidence estimates and 95% confidence intervals
Chao's lower bound estimator
Total number of cases in population
Sensitivity lab %
Sensitivity notifications %
Total number of cases in population
Sensitivity notifications %
Incidence (per 100,000)
dialysis & gastroenterology omitted
Agglutination < 1/80
notified lab cases not meeting WHO criteria included
For hepatitis B, the number of cases meeting WHO criteria was 10285, compared with 225 notifications. As HBsAg, is positive in carrier or chronic cases, and as Turkey is an intermediate-endemic country for Hepatitis B , a second analysis was performed with IgM anti-HBc positive cases only, yielding 380 cases diagnosed in laboratories and an incidence estimate (Tables 3, 4).
Among the hepatitis C cases discovered in laboratories in Izmir, few met WHO criteria (n = 148), with only two of them present among notifications. A further analysis was conducted including all anti-HCV positive cases (Tables 3, 4). At least 14.1% (n = 320) of cases found in laboratories were dialysis patients, 14.1% (n = 320) were found positive during blood donor testing, and 8.5%(n = 194) were admitted to a gastroenterology unit. The admitting unit was not known in 22.8% of cases. The dialysis patients in particular were regularly tested serologically at two-month intervals. Of the anti-HCV positive cases found during blood donor testing, 18.8% (n = 60) were notified and constituted the majority of notifications (n = 89). As none of the dialysis/gastroenterology cases were notified, they were omitted and a third analysis was conducted with the remaining 1757 cases to prevent a much higher capture-recapture estimate due to possible negative dependence.
Among brucellosis cases, 25.1% (n = 151) met WHO criteria. Some laboratories had used cut-off 1/80 for agglutination, which was also preferred by some authors , so a second analysis was performed using this cut-off, which included more of the notified cases in the analysis (Tables 3, 4).
Among syphilis notifications, 79.1% (n = 68) were present on the laboratory list but only 52 of them conformed to WHO criteria.
As none of the five measles cases discovered in laboratories were notified, a capture-recapture estimate was not calculated. Of the 272 cases notified, 76.5% were diagnosed in primary health centres where there is no laboratory testing for measles.
For HIV/AIDS, there were 206 positive cases detected in laboratories according to WHO criteria of which 54 were notified. As a serological parameter showing acute/recent infection is lacking for HIV/AIDS -as well as for hepatitis C-cases found positive in laboratories might be cases that were diagnosed in previous years. It was possible to check previous years' notifications for HIV/AIDS, but not for hepatitis C. In total 168 cases were estimated to be from Izmir of which 10 of them were notified in 2003 and a further 24 notified in previous years. As many anti-HIV affirmations could be cases of false-positive , and as only confirmed cases are notified as a rule in Izmir, only the results of confirmed cases (confirmation or RNA positive) are shown in Table 4, giving a notification rate of 100% when compared with all (2003 or earlier) HIV/AIDS notifications. Since 100% of cases were notified, a capture-recapture estimate was not calculated.
This study provides evidence of considerable underreporting of hepatitis, brucellosis and syphilis in Izmir, Turkey. The surveillance system captured less than 1/3 of cases diagnosed in laboratories and the potential contribution of laboratory data to their surveillance was significant. Official rates of disease were less than 1/3 to 1/8 of incidences estimated. Surveillance of HIV/AIDS was satisfactory with 100% of confirmed cases notified. As few facilities actually sent electronic notifications to the researcher, it might be premature to implement electronic notifications in the surveillance system.
This study has the strength of comparing the contribution of laboratory data to notifications in the surveillance of different diseases in Izmir. This is the first comprehensive study on the evaluation of completeness of communicable disease surveillance in Turkey through collection of data from a source independent of the ministry's official notifications.
As Izmir is a referral centre for Aegean Region, the design was convenient for covering cases from Izmir. This study could not have been conducted in another province in the region since there would have been many cases applying to facilities in Izmir for secondary and tertiary care, reducing coverage of local cases.
Data were collected thoroughly in 77.4% of participating facilities. As for the remainder, inaccessibility to data for the first 3.5 months of 2003 of a tertiary care hospital (one of the six facilities with > 1000 positive results) and lack of data from the virology department of a public health laboratory of the ministry (a facility contributing with 97 positive results for brucellosis and syphilis with its bacteriology department) are considered as an important limitation of the study. Another limitation is the missing residence for one fourth of cases in tertiary care, which could have caused some misclassification when eliminating cases out of Izmir.
Among the non-participating facilities, lack of hepatitis B and C cases from one public blood donation centre is considered to be significant. The other non-participating facilities are not considered to cause much limitation since most of them are small-scale private laboratories which would have found only 1-5 positive results throughout the year or no positive result at all.
Another limitation is the use of different serological test procedures with different sensitivities and specificities for the same parameter in different laboratories, possibly leading to some false positive and false negative results which cannot be controlled due to the lack of clinical data in this study. This has also caused carrier or chronic cases to be on the laboratory list. The surveillance system in operation in 2003 did not have any case definitions for notifications, so carrier cases were also found among notifications, along with probable cases.
There are four main assumptions that should be evaluated before implementing a capture-recapture analysis . The province of Izmir can be considered a closed population. However; during the course of the research which covered the whole of the year 2003, there might have been some in- or out- migration from the city, which would have falsified to a small degree the assumption that the population is a closed one.
Theoretically, the two lists could be positively dependent, since the notification probability of a case diagnosed in laboratory could be greater. Chronic cases or cases with severe disease are more likely to be notified . Positive dependence would result in the calculation of a smaller estimate, thus estimation of a higher completeness of notifications [6, 9, 18]. Inaccessibility to the first 3.5 months' data of a tertiary care hospital might have created negative dependence since the cases notified from that hospital in that period do not have the possibility of being on the laboratory list, if not also diagnosed elsewhere. This problem is not anticipated for the virology department of the public health laboratory since they do not notify any disease except HIV/AIDS. However; some of the few cases notified by primary health centres might have been diagnosed in this laboratory. Overall, when this study was conducted, laboratory confirmation was not required for notifying a case, and as the results show, notifications and laboratory reports are almost independent samples, combined with the considerable underreporting of laboratory cases. For hepatitis C, some of the cases found in labs could have been cases from previous years, leading to some negative dependence and thus a considerably high estimate.
As for the assumption on equal catchability, this might have been affected by the lack of data in some participating facilities and laboratories that did not accept to participate in the study, both of which are discussed above.
Capture-recapture results according to both methods are similar when the number of cases appearing on both lists is relatively higher. When different, estimates calculated according to Chapman's formula can be considered more cautiously, while Chao's method might be more realistic if there is an underestimation due to some positive dependence.
This study has showed that there is a considerable underreporting of infectious diseases in Izmir. A similar underreporting might be expected for the whole of Turkey, with official reported rates 9.64 and 7.3 per 100,000 for hepatitis A and B , much lower than incidences estimated for Izmir which is considered as one of the most developed provinces where incidences might be expected to be lower. The reported incidence of 20.30 per 100,000 for brucellosis in Turkey might also need caution in interpretation , considering its underreporting rate in Izmir.
This study has also showed that laboratory data can make an important contribution to the surveillance system of these diseases classified as Group A in the new system . According to the new communicable disease surveillance system introduced as of the beginning of 2005, most of the notifiable diseases are classified as Group A which are notified by clinicians as in the previous system and laboratories are not involved in this passive surveillance . Only a limited number of pathogens classified as Group D are reported by laboratories (Shigella, Salmonella, EHEC, Campylobacter, Listeria monocytogenes, Entamoeba histolytica, Cryptosporidium, Giardia intestinalis and Chlamydia trachomatis). The only changes in the system for group A diseases are the introduction of standard case definitions and the classification of cases as confirmed/probable. The reason why a considerable proportion of cases notified have not been diagnosed in laboratories could be the lack of case definitions in the previous system.
Among types of facilities, hospitals were significant with the diagnostic rate of 89% of all positive results. The public sector played an important role in the diagnosis of these diseases through a contribution of 93% of all positive results. A strategy to improve completeness could be the active surveillance of the few public facilities with the highest numbers of positive results. Completeness of reporting could also be achieved by making it mandatory to report diagnoses from all laboratories.
For measles, the low number of cases diagnosed in laboratories and the high percentage of notifications from primary health centres implies the importance of clinical diagnosis and the lack of standard case definitions. Its reported rate is consistent with the incidences of measles in Turkey (8.1 per 100000) . When incidence decreases with increasing control of disease, it becomes important to confirm suspected cases . In former East Germany with very high vaccine coverage and incidence rates lowered to 0.7 per 100,000, 71% of notified cases were laboratory-confirmed compared with 34% in former West Germany with an incidence rate of 8.7 per 100,000 . As Measles Elimination Programme has started in 2002 in Turkey, laboratory data can be expected to become more important in following years .
According to official incidences, Izmir could be classified as a low endemicity zone like Europe for hepatitis A while with the addition of cases discovered in laboratories, its incidence occurrence level becomes intermediate, like Turkey in general .
This study required an enormous effort to collect data which will never be feasible for routine surveillance. Methods for capturing these data could be computer queries to capture positive cases among laboratory results [26, 27], and/or active surveillance in the few large-scale facilities where most cases occur.
This is the first study quantifying completeness of communicable disease surveillance in Turkey. A considerable underreporting of hepatitis, brucellosis and syphilis has been found while surveillance of HIV was satisfactory. Mandatory laboratory based surveillance of communicable diseases should be incorporated into the surveillance system. If this is not possible, active surveillance could be carried out in a few large-scale tertiary public laboratories to capture most of the cases. Further research is also required to investigate the false positive test results and reasons of under-notification by clinicians.
Special thanks to Izmir Provincial Health Directorate (departments on medical facilities and especially communicable diseases) and to the staff of all the public and private hospitals, laboratories and blood donation centres accepting to participate in the study for their help, support and kindness in sharing their data. I am thankful to Prof. Dankmar Böhning for his advice on using Chao's lower bound estimator, for providing its formula and variance and for his comments. Finally we would like to acknowledge TÜBİTAK for the grant provided for this study [grant no. SBAG-2589 (102S068)], including financial support for travel expenses and computer which were key supports for data collection.
This study has been presented orally in the conference "Recent Developments in Capture-Recapture Methods and their Applications" which was held in July 12-13, 2007 in Reading, UK.
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